Rank transform of a SingleCellExperiment object.

Source: R/RankTransf.R

Rank transform of a SingleCellExperiment object.

RankTransf(sce, assayname = "counts", targetAssay = "rank", sparse = TRUE)

Arguments

sce

SingleCellExperiment object.

assayname

Character.

targetAssay

Character.

sparse

Logic.

Value

An updated SingleCellExperiment object with a rank transformed assay.

Examples

sce <- scuttle::mockSCE(ncells = 20, ngenes = 10)
sce <- RankTransf(sce)
assay(sce, "rank")[1:3, 1:3]